Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112365209
[wgsExptID] => 25
[Batch] => CRUKCI_3
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 17
[DateSubmitted] => 2022-11-17
[FastqID] => 502
[wgsID] => 329
[fwdFile] => BC_39486_R1.fastq.gz
[fwdMd5] => d9faabc45a3930c6e2143ebbb909f7d3
[revFile] => BC_39486_R2.fastq.gz
[revMd5] => dd6e191cf66881ccde446d59339b49de
[rawReads] => 595124538
[FastqRCS] => 1
[enaExperiment] => ERX10255919
[enaRun] => ERR10807452
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 503
[wgsID] => 329
[refGenome] => cf4
[dateSubmitted] => 2023-07-27 15:15:00
[dateCompleted] => 2023-07-28 19:12:00
[bamMd5] => c82e8a1c2e6f062f96afdb326f0f38f6
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 508485651
[primaryReads] =>
[mappedReads] => 506256503
[primaryMapped] =>
[pairedReads] => 491228166
[meanInsertSize] => 445.85
[meanReadDepth] => 22.93
[variantsCalled] => 6136233
[variantsFiltered] => 5863547
[snpCount] => 4109918
[snpHom] => 1984093
[snpHet] => 2125825
[indelCount] => 1762406
[insHom] => 365446
[delHom] => 491797
[insHet] => 428387
[delHet] => 512974
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21617050
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617050/BC_39486-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242