Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099824
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 835
                    [wgsID] => 518
                    [fwdFile] => BE_38988_R1.fastq.gz
                    [fwdMd5] => 015822741286d9532edfc33cb4efe703
                    [revFile] => BE_38988_R2.fastq.gz
                    [revMd5] => f827ffcd318d0ba10349a5fbfc17f500
                    [rawReads] => 1057124278
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611254
                    [enaRun] => ERR14209034
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1705
                    [wgsID] => 518
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-24 09:44:38
                    [dateCompleted] => 2024-12-25 06:00:51
                    [bamMd5] => 6732b2df5c203d167199cbb76e17a8e2
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 798469136
                    [primaryReads] => 789372514
                    [mappedReads] => 797388171
                    [primaryMapped] => 788291549
                    [pairedReads] => 775788870
                    [meanInsertSize] => 351.34
                    [meanReadDepth] => 32.19
                    [variantsCalled] => 6260002
                    [variantsFiltered] => 5959576
                    [snpCount] => 4210984
                    [snpHom] => 1888866
                    [snpHet] => 2322118
                    [indelCount] => 1757956
                    [insHom] => 337474
                    [delHom] => 459006
                    [insHet] => 449493
                    [delHet] => 548092
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759312
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759312/BE_38988-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242