Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099827
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 838
                    [wgsID] => 521
                    [fwdFile] => BE_39075_R1.fastq.gz
                    [fwdMd5] => 1b163ed96c369bfd0eb8c29b1b0c4960
                    [revFile] => BE_39075_R2.fastq.gz
                    [revMd5] => 7203a7aff7b740a9cf8b4442b6fc4202
                    [rawReads] => 1048277020
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611257
                    [enaRun] => ERR14209037
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1707
                    [wgsID] => 521
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-24 09:45:49
                    [dateCompleted] => 2024-12-25 10:27:50
                    [bamMd5] => bd36bc24939482a61ea72fbee382d22c
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 800263615
                    [primaryReads] => 790184773
                    [mappedReads] => 798988413
                    [primaryMapped] => 788909571
                    [pairedReads] => 775287578
                    [meanInsertSize] => 343.85
                    [meanReadDepth] => 32.06
                    [variantsCalled] => 6470105
                    [variantsFiltered] => 6181563
                    [snpCount] => 4374516
                    [snpHom] => 1730768
                    [snpHet] => 2643748
                    [indelCount] => 1817544
                    [insHom] => 308674
                    [delHom] => 424382
                    [insHet] => 507210
                    [delHet] => 618285
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759313
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759313/BE_39075-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242