Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099828
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 839
[wgsID] => 522
[fwdFile] => BE_39128_R1.fastq.gz
[fwdMd5] => e3dc705e6ba80c062a052b4e57950109
[revFile] => BE_39128_R2.fastq.gz
[revMd5] => 4569f0d4019eaf862c2e54d92a15855f
[rawReads] => 1160908156
[FastqRCS] => 1
[enaExperiment] => ERX13611258
[enaRun] => ERR14209038
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1708
[wgsID] => 522
[refGenome] => cf4
[dateSubmitted] => 2024-12-24 09:46:13
[dateCompleted] => 2024-12-25 08:53:20
[bamMd5] => 7dd2e5fdd08ef92c68dbac9cc1544d2e
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 603048108
[primaryReads] => 596834375
[mappedReads] => 601549804
[primaryMapped] => 595336071
[pairedReads] => 584502962
[meanInsertSize] => 358.29
[meanReadDepth] => 24.51
[variantsCalled] => 6048823
[variantsFiltered] => 5786334
[snpCount] => 4104011
[snpHom] => 1981669
[snpHet] => 2122342
[indelCount] => 1690313
[insHom] => 362826
[delHom] => 487585
[insHet] => 390436
[delHet] => 479013
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ25759316
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759316/BE_39128-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242