Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099828
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 839
                    [wgsID] => 522
                    [fwdFile] => BE_39128_R1.fastq.gz
                    [fwdMd5] => e3dc705e6ba80c062a052b4e57950109
                    [revFile] => BE_39128_R2.fastq.gz
                    [revMd5] => 4569f0d4019eaf862c2e54d92a15855f
                    [rawReads] => 1160908156
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611258
                    [enaRun] => ERR14209038
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1708
                    [wgsID] => 522
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-24 09:46:13
                    [dateCompleted] => 2024-12-25 08:53:20
                    [bamMd5] => 7dd2e5fdd08ef92c68dbac9cc1544d2e
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 603048108
                    [primaryReads] => 596834375
                    [mappedReads] => 601549804
                    [primaryMapped] => 595336071
                    [pairedReads] => 584502962
                    [meanInsertSize] => 358.29
                    [meanReadDepth] => 24.51
                    [variantsCalled] => 6048823
                    [variantsFiltered] => 5786334
                    [snpCount] => 4104011
                    [snpHom] => 1981669
                    [snpHet] => 2122342
                    [indelCount] => 1690313
                    [insHom] => 362826
                    [delHom] => 487585
                    [insHet] => 390436
                    [delHet] => 479013
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759316
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759316/BE_39128-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242