Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190230
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 101
[wgsID] => 206
[fwdFile] => AFF_32320_R1.fastq.gz
[fwdMd5] => 169bbc928158af3da339e26b92cdb007
[revFile] => AFF_32320_R2.fastq.gz
[revMd5] => 04aa9fc4a503a2bc2d53bbe6a9de4d2b
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679354
[enaRun] => ERR11271784
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 243
[wgsID] => 206
[refGenome] => cf4
[dateSubmitted] => 2022-11-07 11:29:00
[dateCompleted] => 2022-11-08 06:17:00
[bamMd5] => edb2f645e4a054e28697c392cb3916a9
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1058608295
[primaryReads] =>
[mappedReads] => 866206930
[primaryMapped] =>
[pairedReads] => 848651456
[meanInsertSize] => 463.21
[meanReadDepth] => 39.21
[variantsCalled] => 6327729
[variantsFiltered] => 5947787
[snpCount] => 4143645
[snpHom] => 1990059
[snpHet] => 2153586
[indelCount] => 1814491
[insHom] => 308362
[delHom] => 430970
[insHet] => 499748
[delHet] => 612308
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] => ERZ21375572
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375572/AFF_32320-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242