Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN03168377
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 730
[wgsID] => 336
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] =>
[FastqRCS] => 0
[enaExperiment] =>
[enaRun] =>
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 505
[wgsID] => 336
[refGenome] => cf4
[dateSubmitted] => 2023-02-07 11:35:00
[dateCompleted] => 2023-02-07 21:43:00
[bamMd5] => 2c8c863d1ca310a78226f71ad04be67e
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 429547535
[primaryReads] =>
[mappedReads] => 426664099
[primaryMapped] =>
[pairedReads] => 411199936
[meanInsertSize] => 608.25
[meanReadDepth] => 15.45
[variantsCalled] => 6138694
[variantsFiltered] => 5801261
[snpCount] => 4285579
[snpHom] =>
[snpHet] =>
[indelCount] => 1522024
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
