Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190178
[wgsExptID] => 17
[Batch] => Edinburgh_7
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 19
[DateSubmitted] =>
[FastqID] => 104
[wgsID] => 271
[fwdFile] => AT_33568_R1.fastq.gz
[fwdMd5] => d95355f8b4a72000307ef2597603ef42
[revFile] => AT_33568_R2.fastq.gz
[revMd5] => 9491d99ce29961699a530f43fe54cba3
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10665922
[enaRun] => ERR11257713
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 263
[wgsID] => 271
[refGenome] => cf4
[dateSubmitted] => 2022-11-08 15:48:00
[dateCompleted] => 2022-11-09 07:59:00
[bamMd5] => 514d49e7c174ac5ab8c079a2d8c33c2f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 873752899
[primaryReads] =>
[mappedReads] => 858831300
[primaryMapped] =>
[pairedReads] => 841926516
[meanInsertSize] => 459.00
[meanReadDepth] => 43.50
[variantsCalled] => 6157952
[variantsFiltered] => 5778159
[snpCount] => 4030707
[snpHom] => 2113921
[snpHet] => 1916786
[indelCount] => 1757128
[insHom] => 344882
[delHom] => 473520
[insHet] => 440174
[delHet] => 531291
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21780952
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780952/AT_33568-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242