Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190232
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 106
[wgsID] => 216
[fwdFile] => B_32562_R1.fastq.gz
[fwdMd5] => b2dffc6b8fb95f94e93ec14178a31d4f
[revFile] => B_32562_R2.fastq.gz
[revMd5] => 7cc830c5a64d456aa645e5def42795f0
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679362
[enaRun] => ERR11271792
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 361
[wgsID] => 216
[refGenome] => cf4
[dateSubmitted] => 2023-03-17 10:37:00
[dateCompleted] => 2023-03-19 01:00:00
[bamMd5] => a1df48de684bb73eb3e638a515656886
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 956650586
[primaryReads] =>
[mappedReads] => 954907596
[primaryMapped] =>
[pairedReads] => 937954058
[meanInsertSize] => 428.28
[meanReadDepth] => 41.04
[variantsCalled] => 5845164
[variantsFiltered] => 5449064
[snpCount] => 3793252
[snpHom] => 2268391
[snpHet] => 1524861
[indelCount] => 1663656
[insHom] => 364672
[delHom] => 500947
[insHet] => 366190
[delHet] => 456089
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21375582
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375582/B_32562-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242