Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190002
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 107
[wgsID] => 50
[fwdFile] => BaH_25229_R1.fastq.gz
[fwdMd5] => efa14f788a1bcfd021fb3779afbcbf14
[revFile] => BaH_25229_R2.fastq.gz
[revMd5] => 2081ca8554fd6689681c1443ddc4389e
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019030
[enaRun] => ERR7448276
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 97
[wgsID] => 50
[refGenome] => cf4
[dateSubmitted] => 2022-09-09 11:08:00
[dateCompleted] => 2022-09-10 07:22:00
[bamMd5] => b6d46ce2affbb97887a7d7f5d30a3f60
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 858430216
[primaryReads] =>
[mappedReads] => 756146784
[primaryMapped] =>
[pairedReads] => 741823340
[meanInsertSize] => 478.33
[meanReadDepth] => 31.56
[variantsCalled] => 6284522
[variantsFiltered] => 5959009
[snpCount] => 4143623
[snpHom] => 1931330
[snpHet] => 2212293
[indelCount] => 1825970
[insHom] => 300341
[delHom] => 423673
[insHet] => 508801
[delHet] => 630572
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21659968
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659968/BaH_25229-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242