Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190002
                    [wgsExptID] => 22
                    [Batch] => Edinburgh_12
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 20
                    [DateSubmitted] => 
                    [FastqID] => 107
                    [wgsID] => 50
                    [fwdFile] => BaH_25229_R1.fastq.gz
                    [fwdMd5] => efa14f788a1bcfd021fb3779afbcbf14
                    [revFile] => BaH_25229_R2.fastq.gz
                    [revMd5] => 2081ca8554fd6689681c1443ddc4389e
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX7019030
                    [enaRun] => ERR7448276
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 97
                    [wgsID] => 50
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-09-09 11:08:00
                    [dateCompleted] => 2022-09-10 07:22:00
                    [bamMd5] => b6d46ce2affbb97887a7d7f5d30a3f60
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 858430216
                    [primaryReads] => 
                    [mappedReads] => 756146784
                    [primaryMapped] => 
                    [pairedReads] => 741823340
                    [meanInsertSize] => 478.33
                    [meanReadDepth] => 31.56
                    [variantsCalled] => 6284522
                    [variantsFiltered] => 5959009
                    [snpCount] => 4143623
                    [snpHom] => 1931330
                    [snpHet] => 2212293
                    [indelCount] => 1825970
                    [insHom] => 300341
                    [delHom] => 423673
                    [insHet] => 508801
                    [delHet] => 630572
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659968
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659968/BaH_25229-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242