Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189996
                    [wgsExptID] => 22
                    [Batch] => Edinburgh_12
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 20
                    [DateSubmitted] => 
                    [FastqID] => 110
                    [wgsID] => 53
                    [fwdFile] => BaH_25393_R1.fastq.gz
                    [fwdMd5] => be6572536e0aac35c6d927931d3a7052
                    [revFile] => BaH_25393_R2.fastq.gz
                    [revMd5] => 74d264ca041ca9269492e6a35056189e
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX7019024
                    [enaRun] => ERR7448270
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 91
                    [wgsID] => 53
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-09-06 12:51:00
                    [dateCompleted] => 2022-09-07 07:51:00
                    [bamMd5] => 028129aefe84d660a26200b3c78041bb
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1011392304
                    [primaryReads] => 
                    [mappedReads] => 789232900
                    [primaryMapped] => 
                    [pairedReads] => 772551810
                    [meanInsertSize] => 513.23
                    [meanReadDepth] => 38.60
                    [variantsCalled] => 6119656
                    [variantsFiltered] => 5761305
                    [snpCount] => 4004980
                    [snpHom] => 2134771
                    [snpHet] => 1870209
                    [indelCount] => 1765708
                    [insHom] => 337891
                    [delHom] => 470833
                    [insHet] => 444106
                    [delHet] => 544710
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659971
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659971/BaH_25393-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242