Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189995
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 112
[wgsID] => 55
[fwdFile] => BaH_25410_R1.fastq.gz
[fwdMd5] => 8f5ae0512320d2d4dae7dc73ee63275d
[revFile] => BaH_25410_R2.fastq.gz
[revMd5] => d986d40996262320dadd207afb54264e
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019023
[enaRun] => ERR7448269
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 90
[wgsID] => 55
[refGenome] => cf4
[dateSubmitted] => 2022-09-14 16:28:00
[dateCompleted] => 2022-09-15 11:18:00
[bamMd5] => 7a243f1fdf7a98be43dae0f282b9bb7d
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1007562269
[primaryReads] =>
[mappedReads] => 944233144
[primaryMapped] =>
[pairedReads] => 925754638
[meanInsertSize] => 500.84
[meanReadDepth] => 46.45
[variantsCalled] => 6415281
[variantsFiltered] => 6031335
[snpCount] => 4198854
[snpHom] => 1906085
[snpHet] => 2292769
[indelCount] => 1843856
[insHom] => 297333
[delHom] => 416653
[insHet] => 524854
[delHet] => 645089
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21659973
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659973/BaH_25410-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242