Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189995
                    [wgsExptID] => 22
                    [Batch] => Edinburgh_12
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 20
                    [DateSubmitted] => 
                    [FastqID] => 112
                    [wgsID] => 55
                    [fwdFile] => BaH_25410_R1.fastq.gz
                    [fwdMd5] => 8f5ae0512320d2d4dae7dc73ee63275d
                    [revFile] => BaH_25410_R2.fastq.gz
                    [revMd5] => d986d40996262320dadd207afb54264e
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX7019023
                    [enaRun] => ERR7448269
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 90
                    [wgsID] => 55
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-09-14 16:28:00
                    [dateCompleted] => 2022-09-15 11:18:00
                    [bamMd5] => 7a243f1fdf7a98be43dae0f282b9bb7d
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1007562269
                    [primaryReads] => 
                    [mappedReads] => 944233144
                    [primaryMapped] => 
                    [pairedReads] => 925754638
                    [meanInsertSize] => 500.84
                    [meanReadDepth] => 46.45
                    [variantsCalled] => 6415281
                    [variantsFiltered] => 6031335
                    [snpCount] => 4198854
                    [snpHom] => 1906085
                    [snpHet] => 2292769
                    [indelCount] => 1843856
                    [insHom] => 297333
                    [delHom] => 416653
                    [insHet] => 524854
                    [delHet] => 645089
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659973
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659973/BaH_25410-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242