Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189999
                    [wgsExptID] => 22
                    [Batch] => Edinburgh_12
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 20
                    [DateSubmitted] => 
                    [FastqID] => 113
                    [wgsID] => 57
                    [fwdFile] => BaH_25801_R1.fastq.gz
                    [fwdMd5] => 5ecbe07d4a5ea90653616d9b8fb24d42
                    [revFile] => BaH_25801_R2.fastq.gz
                    [revMd5] => 944981016aa355028eddee9a9b00ded5
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX7019027
                    [enaRun] => ERR7448273
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 94
                    [wgsID] => 57
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-09-14 16:41:00
                    [dateCompleted] => 2022-09-15 11:05:00
                    [bamMd5] => 6e6356be51ba239c6d2d51daaf1b5b31
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 991333330
                    [primaryReads] => 
                    [mappedReads] => 797454294
                    [primaryMapped] => 
                    [pairedReads] => 781537668
                    [meanInsertSize] => 460.48
                    [meanReadDepth] => 37.84
                    [variantsCalled] => 6214924
                    [variantsFiltered] => 5883198
                    [snpCount] => 4086979
                    [snpHom] => 1995097
                    [snpHet] => 2091882
                    [indelCount] => 1806753
                    [insHom] => 311825
                    [delHom] => 436904
                    [insHet] => 489810
                    [delHet] => 604601
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659974
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659974/BaH_25801-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242