Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190203
                    [wgsExptID] => 12
                    [Batch] => Edinburgh_2
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 36
                    [DateSubmitted] => 
                    [FastqID] => 117
                    [wgsID] => 149
                    [fwdFile] => BaH_29716_R1.fastq.gz
                    [fwdMd5] => 5416bc059c203859cc6e2499c8e8ff73
                    [revFile] => BaH_29716_R2.fastq.gz
                    [revMd5] => 438fd1b76a91120efc8eeb598e26ec34
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10692170
                    [enaRun] => ERR11284561
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 322
                    [wgsID] => 149
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-16 12:19:00
                    [dateCompleted] => 2023-03-17 06:49:00
                    [bamMd5] => 014e17912a5d5cf1d30c98d9efac1b30
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 978406832
                    [primaryReads] => 
                    [mappedReads] => 976659912
                    [primaryMapped] => 
                    [pairedReads] => 959164162
                    [meanInsertSize] => 457.93
                    [meanReadDepth] => 46.42
                    [variantsCalled] => 6211487
                    [variantsFiltered] => 5841661
                    [snpCount] => 4068050
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1784069
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21782983
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782983/BaH_29716-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242