Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190204
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 118
[wgsID] => 155
[fwdFile] => BaH_31929_R1.fastq.gz
[fwdMd5] => 5f5051611e0ff746d4b548daaa82d4f9
[revFile] => BaH_31929_R2.fastq.gz
[revMd5] => 2bac01e33c04cfe0e2892a5fc498f8a1
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10692174
[enaRun] => ERR11284565
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 328
[wgsID] => 155
[refGenome] => cf4
[dateSubmitted] => 2023-03-16 12:19:00
[dateCompleted] => 2023-03-17 06:29:00
[bamMd5] => a252358a3142df7bf5726757f6f4bc14
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 977401020
[primaryReads] =>
[mappedReads] => 975293382
[primaryMapped] =>
[pairedReads] => 957317100
[meanInsertSize] => 461.83
[meanReadDepth] => 45.93
[variantsCalled] => 6278268
[variantsFiltered] => 5898115
[snpCount] => 4112566
[snpHom] =>
[snpHet] =>
[indelCount] => 1796413
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21782984
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782984/BaH_31929-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242