Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190003
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 119
[wgsID] => 61
[fwdFile] => BaH_32777_R1.fastq.gz
[fwdMd5] => a8ab3674c04211392d55ee7f71f7a717
[revFile] => BaH_32777_R2.fastq.gz
[revMd5] => 30e59bd5083e024ebde85842374f5ec5
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019031
[enaRun] => ERR7448277
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 98
[wgsID] => 61
[refGenome] => cf4
[dateSubmitted] => 2022-09-09 11:08:00
[dateCompleted] => 2022-09-10 05:27:00
[bamMd5] => 994f9b8bcc419158969f541f57891baa
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 988358883
[primaryReads] =>
[mappedReads] => 976538317
[primaryMapped] =>
[pairedReads] => 956399764
[meanInsertSize] => 470.63
[meanReadDepth] => 50.38
[variantsCalled] => 6331348
[variantsFiltered] => 5938244
[snpCount] => 4128216
[snpHom] => 1951721
[snpHet] => 2176495
[indelCount] => 1821051
[insHom] => 303153
[delHom] => 425244
[insHet] => 509523
[delHet] => 622232
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21659976
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659976/BaH_32777-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242