Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190003
                    [wgsExptID] => 22
                    [Batch] => Edinburgh_12
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 20
                    [DateSubmitted] => 
                    [FastqID] => 119
                    [wgsID] => 61
                    [fwdFile] => BaH_32777_R1.fastq.gz
                    [fwdMd5] => a8ab3674c04211392d55ee7f71f7a717
                    [revFile] => BaH_32777_R2.fastq.gz
                    [revMd5] => 30e59bd5083e024ebde85842374f5ec5
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX7019031
                    [enaRun] => ERR7448277
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 98
                    [wgsID] => 61
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-09-09 11:08:00
                    [dateCompleted] => 2022-09-10 05:27:00
                    [bamMd5] => 994f9b8bcc419158969f541f57891baa
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 988358883
                    [primaryReads] => 
                    [mappedReads] => 976538317
                    [primaryMapped] => 
                    [pairedReads] => 956399764
                    [meanInsertSize] => 470.63
                    [meanReadDepth] => 50.38
                    [variantsCalled] => 6331348
                    [variantsFiltered] => 5938244
                    [snpCount] => 4128216
                    [snpHom] => 1951721
                    [snpHet] => 2176495
                    [indelCount] => 1821051
                    [insHom] => 303153
                    [delHom] => 425244
                    [insHet] => 509523
                    [delHet] => 622232
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659976
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659976/BaH_32777-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242