Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190005
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 123
[wgsID] => 66
[fwdFile] => BaH_35568_R1.fastq.gz
[fwdMd5] => 250b113c2f0c7ca6c0088106b5d80cef
[revFile] => BaH_35568_R2.fastq.gz
[revMd5] => 8575e6e91b7160aed59fe9a6c9aae526
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019033
[enaRun] => ERR7448279
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 100
[wgsID] => 66
[refGenome] => cf4
[dateSubmitted] => 2022-09-09 11:08:00
[dateCompleted] => 2022-09-10 08:14:00
[bamMd5] => 034ff3ce428c58c7a4d32821376145a0
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 834881705
[primaryReads] =>
[mappedReads] => 735484047
[primaryMapped] =>
[pairedReads] => 722230046
[meanInsertSize] => 467.55
[meanReadDepth] => 34.21
[variantsCalled] => 6210853
[variantsFiltered] => 5900874
[snpCount] => 4108819
[snpHom] => 1952054
[snpHet] => 2156765
[indelCount] => 1801931
[insHom] => 307455
[delHom] => 432151
[insHet] => 489591
[delHet] => 608786
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242