Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190006
                    [wgsExptID] => 22
                    [Batch] => Edinburgh_12
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 20
                    [DateSubmitted] => 
                    [FastqID] => 124
                    [wgsID] => 67
                    [fwdFile] => BaH_35632_R1.fastq.gz
                    [fwdMd5] => 417177d48e2d17cbabfa638cef56d316
                    [revFile] => BaH_35632_R2.fastq.gz
                    [revMd5] => b8b0a799b01430e7cbf3b1e2bbf907a4
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX7019034
                    [enaRun] => ERR7448280
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 101
                    [wgsID] => 67
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-09-08 13:52:00
                    [dateCompleted] => 2022-09-09 09:08:00
                    [bamMd5] => 94db4fb554ced2fb0f796e03edbf30cd
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 960192591
                    [primaryReads] => 
                    [mappedReads] => 824681775
                    [primaryMapped] => 
                    [pairedReads] => 808554698
                    [meanInsertSize] => 449.75
                    [meanReadDepth] => 37.47
                    [variantsCalled] => 6235307
                    [variantsFiltered] => 5913663
                    [snpCount] => 4117027
                    [snpHom] => 1966404
                    [snpHet] => 2150623
                    [indelCount] => 1806698
                    [insHom] => 307021
                    [delHom] => 432401
                    [insHet] => 493797
                    [delHet] => 609917
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659980
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659980/BaH_35632-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242