Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190182
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 131
                    [wgsID] => 265
                    [fwdFile] => BC-x_26334_R1.fastq.gz
                    [fwdMd5] => 40107fac34ac07a18f2dcb6968178a26
                    [revFile] => BC-x_26334_R2.fastq.gz
                    [revMd5] => 21cb57e8472bf6a67e6afdd12a1d4b0e
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10665916
                    [enaRun] => ERR11257707
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 174
                    [wgsID] => 265
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-17 13:29:00
                    [dateCompleted] => 2022-10-18 10:38:00
                    [bamMd5] => 7e9099267b3386c882914877d3b4e507
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 930807075
                    [primaryReads] => 
                    [mappedReads] => 919235562
                    [primaryMapped] => 
                    [pairedReads] => 900073670
                    [meanInsertSize] => 467.76
                    [meanReadDepth] => 46.35
                    [variantsCalled] => 6869642
                    [variantsFiltered] => 6466117
                    [snpCount] => 4529630
                    [snpHom] => 1596263
                    [snpHet] => 2933367
                    [indelCount] => 1950298
                    [insHom] => 246391
                    [delHom] => 347991
                    [insHet] => 636866
                    [delHet] => 771775
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780955
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780956/BC-x_26334-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242