Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112365194
                    [wgsExptID] => 25
                    [Batch] => CRUKCI_3
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
                    [PcrFree] => Y
                    [SampleCount] => 17
                    [DateSubmitted] => 2022-11-17
                    [FastqID] => 487
                    [wgsID] => 314
                    [fwdFile] => BC_20042_R1.fastq.gz
                    [fwdMd5] => a497257528f9d9537dd12adb60d99477
                    [revFile] => BC_20042_R2.fastq.gz
                    [revMd5] => f3bdbd54c783e1c9d822bd7eaab28b2d
                    [rawReads] => 813055474
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10255904
                    [enaRun] => ERR10807437
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 488
                    [wgsID] => 314
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-20 15:38:00
                    [dateCompleted] => 2023-07-21 20:44:00
                    [bamMd5] => 630d5a902b37ebd473bd332ecf14167f
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 715668598
                    [primaryReads] => 
                    [mappedReads] => 713166842
                    [primaryMapped] => 
                    [pairedReads] => 694041678
                    [meanInsertSize] => 412.41
                    [meanReadDepth] => 31.82
                    [variantsCalled] => 6603642
                    [variantsFiltered] => 6299578
                    [snpCount] => 4414534
                    [snpHom] => 1699686
                    [snpHet] => 2714848
                    [indelCount] => 1896835
                    [insHom] => 300100
                    [delHom] => 414700
                    [insHet] => 561974
                    [delHet] => 669542
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21617036
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617036/BC_20042-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242