Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112365198
                    [wgsExptID] => 25
                    [Batch] => CRUKCI_3
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
                    [PcrFree] => Y
                    [SampleCount] => 17
                    [DateSubmitted] => 2022-11-17
                    [FastqID] => 491
                    [wgsID] => 318
                    [fwdFile] => BC_27368_R1.fastq.gz
                    [fwdMd5] => 5cb11ffe5fc1be679d59834954e3b9a2
                    [revFile] => BC_27368_R2.fastq.gz
                    [revMd5] => 635b9d1f890bcf9541b1ee47fd34dfcc
                    [rawReads] => 793372244
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10255908
                    [enaRun] => ERR10807441
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 492
                    [wgsID] => 318
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-20 15:40:00
                    [dateCompleted] => 2023-07-21 12:36:00
                    [bamMd5] => 00ecb10413ea86c6aa18bd3cbfb37913
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 797212417
                    [primaryReads] => 
                    [mappedReads] => 793308546
                    [primaryMapped] => 
                    [pairedReads] => 776232818
                    [meanInsertSize] => 524.57
                    [meanReadDepth] => 39.91
                    [variantsCalled] => 6608856
                    [variantsFiltered] => 6263815
                    [snpCount] => 4391440
                    [snpHom] => 1742827
                    [snpHet] => 2648613
                    [indelCount] => 1884085
                    [insHom] => 312126
                    [delHom] => 426111
                    [insHet] => 543832
                    [delHet] => 650464
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21617039
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617039/BC_27368-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242