Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112365199
[wgsExptID] => 25
[Batch] => CRUKCI_3
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 17
[DateSubmitted] => 2022-11-17
[FastqID] => 492
[wgsID] => 319
[fwdFile] => BC_27986_R1.fastq.gz
[fwdMd5] => 5e76dd698b33b48ea70ec77a65b6eb76
[revFile] => BC_27986_R2.fastq.gz
[revMd5] => 9bdc045f2c92537383ba6420c83eff65
[rawReads] => 632024860
[FastqRCS] => 1
[enaExperiment] => ERX10255909
[enaRun] => ERR10807442
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 493
[wgsID] => 319
[refGenome] => cf4
[dateSubmitted] => 2023-07-24 10:21:00
[dateCompleted] => 2023-07-25 03:04:00
[bamMd5] => 9a056cfc71b91c46c479b8bbfd8c8bb7
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 553025745
[primaryReads] =>
[mappedReads] => 550062907
[primaryMapped] =>
[pairedReads] => 534837650
[meanInsertSize] => 501.48
[meanReadDepth] => 27.09
[variantsCalled] => 6394203
[variantsFiltered] => 6080884
[snpCount] => 4271856
[snpHom] => 1857226
[snpHet] => 2414630
[indelCount] => 1819083
[insHom] => 337476
[delHom] => 457684
[insHet] => 484100
[delHet] => 581183
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21617040
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617040/BC_27986-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242