Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112365201
[wgsExptID] => 25
[Batch] => CRUKCI_3
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 17
[DateSubmitted] => 2022-11-17
[FastqID] => 494
[wgsID] => 321
[fwdFile] => BC_28191_R1.fastq.gz
[fwdMd5] => 249f7f06e69283666078620445c3e024
[revFile] => BC_28191_R2.fastq.gz
[revMd5] => 0980e44cc1f9657e32e756e8201c0cfc
[rawReads] => 674644162
[FastqRCS] => 1
[enaExperiment] => ERX10255911
[enaRun] => ERR10807444
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 495
[wgsID] => 321
[refGenome] => cf4
[dateSubmitted] => 2023-07-24 10:22:00
[dateCompleted] => 2023-07-25 04:28:00
[bamMd5] => b8973f38625a0d87a91ce7e51c776cb8
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 641386549
[primaryReads] =>
[mappedReads] => 638677905
[primaryMapped] =>
[pairedReads] => 621058468
[meanInsertSize] => 457.16
[meanReadDepth] => 30.13
[variantsCalled] => 6439447
[variantsFiltered] => 6136254
[snpCount] => 4303342
[snpHom] => 1833835
[snpHet] => 2469507
[indelCount] => 1843397
[insHom] => 330444
[delHom] => 449108
[insHet] => 503017
[delHet] => 604651
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21617042
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617042/BC_28191-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242