Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112365201
                    [wgsExptID] => 25
                    [Batch] => CRUKCI_3
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
                    [PcrFree] => Y
                    [SampleCount] => 17
                    [DateSubmitted] => 2022-11-17
                    [FastqID] => 494
                    [wgsID] => 321
                    [fwdFile] => BC_28191_R1.fastq.gz
                    [fwdMd5] => 249f7f06e69283666078620445c3e024
                    [revFile] => BC_28191_R2.fastq.gz
                    [revMd5] => 0980e44cc1f9657e32e756e8201c0cfc
                    [rawReads] => 674644162
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10255911
                    [enaRun] => ERR10807444
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 495
                    [wgsID] => 321
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-24 10:22:00
                    [dateCompleted] => 2023-07-25 04:28:00
                    [bamMd5] => b8973f38625a0d87a91ce7e51c776cb8
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 641386549
                    [primaryReads] => 
                    [mappedReads] => 638677905
                    [primaryMapped] => 
                    [pairedReads] => 621058468
                    [meanInsertSize] => 457.16
                    [meanReadDepth] => 30.13
                    [variantsCalled] => 6439447
                    [variantsFiltered] => 6136254
                    [snpCount] => 4303342
                    [snpHom] => 1833835
                    [snpHet] => 2469507
                    [indelCount] => 1843397
                    [insHom] => 330444
                    [delHom] => 449108
                    [insHet] => 503017
                    [delHet] => 604651
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21617042
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617042/BC_28191-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242