Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112365202
[wgsExptID] => 25
[Batch] => CRUKCI_3
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 17
[DateSubmitted] => 2022-11-17
[FastqID] => 495
[wgsID] => 322
[fwdFile] => BC_28586_R1.fastq.gz
[fwdMd5] => 5c00a17aa09a80ffd1bd3ac0559cc923
[revFile] => BC_28586_R2.fastq.gz
[revMd5] => b249889f09d60c931ccc7f24ef05ef58
[rawReads] => 747101722
[FastqRCS] => 1
[enaExperiment] => ERX10255912
[enaRun] => ERR10807445
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 496
[wgsID] => 322
[refGenome] => cf4
[dateSubmitted] => 2023-07-24 10:22:00
[dateCompleted] => 2023-07-25 06:03:00
[bamMd5] => 7ba3af23896cbb8335636a3c1df8fd7f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 628306351
[primaryReads] =>
[mappedReads] => 626038644
[primaryMapped] =>
[pairedReads] => 610943502
[meanInsertSize] => 454.18
[meanReadDepth] => 30.18
[variantsCalled] => 6574264
[variantsFiltered] => 6256764
[snpCount] => 4390041
[snpHom] => 1723407
[snpHet] => 2666634
[indelCount] => 1878291
[insHom] => 307950
[delHom] => 423464
[insHet] => 543619
[delHet] => 650762
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21617043
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617043/BC_28586-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242