Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190181
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 129
                    [wgsID] => 267
                    [fwdFile] => BC_30512_R1.fastq.gz
                    [fwdMd5] => a61a0ed6d41bcf3ebb31b049ed7cac54
                    [revFile] => BC_30512_R2.fastq.gz
                    [revMd5] => 400a5563a21a74ccad1dd609c4a173f0
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10665918
                    [enaRun] => ERR11257709
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 173
                    [wgsID] => 267
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-17 13:28:00
                    [dateCompleted] => 2022-10-18 09:57:00
                    [bamMd5] => 3644bd98a53ff7318e1e85be7a1a93d9
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 903871331
                    [primaryReads] => 
                    [mappedReads] => 737691619
                    [primaryMapped] => 
                    [pairedReads] => 722464218
                    [meanInsertSize] => 454.17
                    [meanReadDepth] => 35.57
                    [variantsCalled] => 6515659
                    [variantsFiltered] => 6181962
                    [snpCount] => 4327896
                    [snpHom] => 1793688
                    [snpHet] => 2534208
                    [indelCount] => 1865788
                    [insHom] => 286578
                    [delHom] => 401763
                    [insHet] => 551882
                    [delHet] => 668575
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780955
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780955/BC_30512-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242