Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112365205
[wgsExptID] => 25
[Batch] => CRUKCI_3
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 17
[DateSubmitted] => 2022-11-17
[FastqID] => 498
[wgsID] => 325
[fwdFile] => BC_32070_R1.fastq.gz
[fwdMd5] => cba8bf4768ab0a1f722f8505d45ece75
[revFile] => BC_32070_R2.fastq.gz
[revMd5] => dc27bb31bbcf56f1c405ba9bd374e4b2
[rawReads] => 458875298
[FastqRCS] => 1
[enaExperiment] => ERX10255915
[enaRun] => ERR10807448
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 499
[wgsID] => 325
[refGenome] => cf4
[dateSubmitted] => 2023-07-27 15:14:00
[dateCompleted] => 2023-07-28 13:12:00
[bamMd5] => bf4d82a0e91c362e1a72cc2697747f55
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 436520895
[primaryReads] =>
[mappedReads] => 434790726
[primaryMapped] =>
[pairedReads] => 422310010
[meanInsertSize] => 444.58
[meanReadDepth] => 20.45
[variantsCalled] => 6301149
[variantsFiltered] => 6046462
[snpCount] => 4253101
[snpHom] => 1791110
[snpHet] => 2461991
[indelCount] => 1803161
[insHom] => 324298
[delHom] => 444050
[insHet] => 487421
[delHet] => 587669
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21617046
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617046/BC_32070-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242