Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112365206
[wgsExptID] => 25
[Batch] => CRUKCI_3
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 17
[DateSubmitted] => 2022-11-17
[FastqID] => 499
[wgsID] => 326
[fwdFile] => BC_34028_R1.fastq.gz
[fwdMd5] => e26b0a630f839662d19fca4ebe32953d
[revFile] => BC_34028_R2.fastq.gz
[revMd5] => 13433b42c52063daf2f0a6af54e57189
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10255916
[enaRun] => ERR10807449
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 500
[wgsID] => 326
[refGenome] => cf4
[dateSubmitted] => 2023-05-11 00:00:00
[dateCompleted] => 2023-05-12 16:49:00
[bamMd5] => 308f740da979dc5947070218406be491
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 458431936
[primaryReads] =>
[mappedReads] => 456219122
[primaryMapped] =>
[pairedReads] => 443745734
[meanInsertSize] => 470.11
[meanReadDepth] => 21.41
[variantsCalled] => 6563756
[variantsFiltered] => 6273050
[snpCount] => 4421340
[snpHom] => 1647966
[snpHet] => 2773374
[indelCount] => 1862832
[insHom] => 292095
[delHom] => 405006
[insHet] => 548366
[delHet] => 663630
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21617047
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617047/BC_34028-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242