Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112365207
[wgsExptID] => 25
[Batch] => CRUKCI_3
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 17
[DateSubmitted] => 2022-11-17
[FastqID] => 500
[wgsID] => 327
[fwdFile] => BC_37077_R1.fastq.gz
[fwdMd5] => 3289cfe88bd7548df874905634228d8f
[revFile] => BC_37077_R2.fastq.gz
[revMd5] => 585d76c8c700182fe0d2b57c7cd020d1
[rawReads] => 572504938
[FastqRCS] => 1
[enaExperiment] => ERX10255917
[enaRun] => ERR10807450
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 501
[wgsID] => 327
[refGenome] => cf4
[dateSubmitted] => 2023-07-27 15:14:00
[dateCompleted] => 2023-07-28 17:47:00
[bamMd5] => 0f95a6a913fa21d841e242baca7980a0
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 525235233
[primaryReads] =>
[mappedReads] => 522982980
[primaryMapped] =>
[pairedReads] => 508085342
[meanInsertSize] => 428.74
[meanReadDepth] => 24.54
[variantsCalled] => 6406462
[variantsFiltered] => 6137828
[snpCount] => 4313705
[snpHom] => 1763037
[snpHet] => 2550668
[indelCount] => 1834664
[insHom] => 317271
[delHom] => 435663
[insHet] => 511164
[delHet] => 614100
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21617048
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617048/BC_37077-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242