Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721094
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 583
[wgsID] => 346
[fwdFile] => BC_37265_R1.fastq.gz
[fwdMd5] => 0db89d1ca3a2f39fda6327111383c5db
[revFile] => BC_37265_R2.fastq.gz
[revMd5] => 8e57f6ccd57e563647d7b2528bccbecf
[rawReads] => 794604702
[FastqRCS] => 1
[enaExperiment] => ERX10632422
[enaRun] => ERR11203038
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 802
[wgsID] => 346
[refGenome] => cf4
[dateSubmitted] => 2023-06-19 12:38:00
[dateCompleted] => 2023-06-20 04:20:00
[bamMd5] => 3c0b08785ab24863a5ebed7f1e6dd374
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 633387602
[primaryReads] =>
[mappedReads] => 632290144
[primaryMapped] =>
[pairedReads] => 613581272
[meanInsertSize] => 390.35
[meanReadDepth] => 31.24
[variantsCalled] => 6304079
[variantsFiltered] => 5985567
[snpCount] => 4190911
[snpHom] => 1911263
[snpHet] => 2279648
[indelCount] => 1804736
[insHom] => 311336
[delHom] => 434893
[insHet] => 492128
[delHet] => 603700
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21817119
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817119/BC_37265-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242