Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721101
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 595
[wgsID] => 353
[fwdFile] => BC_37876_R1.fastq.gz
[fwdMd5] => 2d2e5f700aa0605304e66114803210d4
[revFile] => BC_37876_R2.fastq.gz
[revMd5] => b7407ac4ec91cc5f3564bc42e9ed4725
[rawReads] => 739159332
[FastqRCS] => 1
[enaExperiment] => ERX10632434
[enaRun] => ERR11203050
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 814
[wgsID] => 353
[refGenome] => cf4
[dateSubmitted] => 2023-06-20 10:01:00
[dateCompleted] => 2023-06-20 23:49:00
[bamMd5] => a020eadfd6984832ad984d81032da82c
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 643580648
[primaryReads] =>
[mappedReads] => 642773028
[primaryMapped] =>
[pairedReads] => 626157224
[meanInsertSize] => 390.17
[meanReadDepth] => 32.32
[variantsCalled] => 6481978
[variantsFiltered] => 6145026
[snpCount] => 4313048
[snpHom] => 1822412
[snpHet] => 2490636
[indelCount] => 1842819
[insHom] => 295523
[delHom] => 415464
[insHet] => 526517
[delHet] => 646161
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21817120
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817120/BC_37876-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242