Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721101
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 595
                    [wgsID] => 353
                    [fwdFile] => BC_37876_R1.fastq.gz
                    [fwdMd5] => 2d2e5f700aa0605304e66114803210d4
                    [revFile] => BC_37876_R2.fastq.gz
                    [revMd5] => b7407ac4ec91cc5f3564bc42e9ed4725
                    [rawReads] => 739159332
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632434
                    [enaRun] => ERR11203050
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 814
                    [wgsID] => 353
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-20 10:01:00
                    [dateCompleted] => 2023-06-20 23:49:00
                    [bamMd5] => a020eadfd6984832ad984d81032da82c
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 643580648
                    [primaryReads] => 
                    [mappedReads] => 642773028
                    [primaryMapped] => 
                    [pairedReads] => 626157224
                    [meanInsertSize] => 390.17
                    [meanReadDepth] => 32.32
                    [variantsCalled] => 6481978
                    [variantsFiltered] => 6145026
                    [snpCount] => 4313048
                    [snpHom] => 1822412
                    [snpHet] => 2490636
                    [indelCount] => 1842819
                    [insHom] => 295523
                    [delHom] => 415464
                    [insHet] => 526517
                    [delHet] => 646161
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817120
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817120/BC_37876-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242