Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190208
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 132
[wgsID] => 159
[fwdFile] => BD_32193_R1.fastq.gz
[fwdMd5] => 10036d501d7881fcd8048d850c2460a2
[revFile] => BD_32193_R2.fastq.gz
[revMd5] => 106857f302e5d5e61c6a4b51acc0b55c
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10692176
[enaRun] => ERR11284567
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 332
[wgsID] => 159
[refGenome] => cf4
[dateSubmitted] => 2023-02-23 14:47:00
[dateCompleted] => 2023-02-24 09:32:00
[bamMd5] => 916e5f3b93e1f17a324d011656008869
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 894137198
[primaryReads] =>
[mappedReads] => 892778950
[primaryMapped] =>
[pairedReads] => 876154116
[meanInsertSize] => 433.48
[meanReadDepth] => 42.21
[variantsCalled] => 6058202
[variantsFiltered] => 5691377
[snpCount] => 3954681
[snpHom] =>
[snpHet] =>
[indelCount] => 1746251
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21782988
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782988/BD_32193-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242