Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190209
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 133
[wgsID] => 162
[fwdFile] => BD_32196_R1.fastq.gz
[fwdMd5] => 2197ad2da54c0f0ffcd1a3d117c98504
[revFile] => BD_32196_R2.fastq.gz
[revMd5] => 83e8e133e119fa06cfeb24d7c6a5e30c
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10692179
[enaRun] => ERR11284570
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 335
[wgsID] => 162
[refGenome] => cf4
[dateSubmitted] => 2023-02-23 14:47:00
[dateCompleted] => 2023-02-24 13:02:00
[bamMd5] => ffefb08a6695a725e43b1a6de82ad200
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 980572823
[primaryReads] =>
[mappedReads] => 979034929
[primaryMapped] =>
[pairedReads] => 961032094
[meanInsertSize] => 448.64
[meanReadDepth] => 45.00
[variantsCalled] => 5875400
[variantsFiltered] => 5490500
[snpCount] => 3800058
[snpHom] =>
[snpHet] =>
[indelCount] => 1699046
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21782989
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782989/BD_32196-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242