Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190210
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 134
[wgsID] => 163
[fwdFile] => BD_32197_R1.fastq.gz
[fwdMd5] => ea2b4daeba14aa03599f0ca0cbe98621
[revFile] => BD_32197_R2.fastq.gz
[revMd5] => 302b134a47a1535e1e4ea865ef89f4a1
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10692180
[enaRun] => ERR11284571
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 336
[wgsID] => 163
[refGenome] => cf4
[dateSubmitted] => 2023-02-23 14:47:00
[dateCompleted] => 2023-02-24 15:55:00
[bamMd5] => 3a1cceeb97fc3f172b8b413fa02b2f49
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 863533209
[primaryReads] =>
[mappedReads] => 861947122
[primaryMapped] =>
[pairedReads] => 843027806
[meanInsertSize] => 449.15
[meanReadDepth] => 40.45
[variantsCalled] => 6036421
[variantsFiltered] => 5659450
[snpCount] => 3935051
[snpHom] =>
[snpHet] =>
[indelCount] => 1733848
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21782990
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782990/BD_32197-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242