Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190210
                    [wgsExptID] => 12
                    [Batch] => Edinburgh_2
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 36
                    [DateSubmitted] => 
                    [FastqID] => 134
                    [wgsID] => 163
                    [fwdFile] => BD_32197_R1.fastq.gz
                    [fwdMd5] => ea2b4daeba14aa03599f0ca0cbe98621
                    [revFile] => BD_32197_R2.fastq.gz
                    [revMd5] => 302b134a47a1535e1e4ea865ef89f4a1
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10692180
                    [enaRun] => ERR11284571
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 336
                    [wgsID] => 163
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-23 14:47:00
                    [dateCompleted] => 2023-02-24 15:55:00
                    [bamMd5] => 3a1cceeb97fc3f172b8b413fa02b2f49
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 863533209
                    [primaryReads] => 
                    [mappedReads] => 861947122
                    [primaryMapped] => 
                    [pairedReads] => 843027806
                    [meanInsertSize] => 449.15
                    [meanReadDepth] => 40.45
                    [variantsCalled] => 6036421
                    [variantsFiltered] => 5659450
                    [snpCount] => 3935051
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1733848
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21782990
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782990/BD_32197-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242