Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190108
[wgsExptID] => 19
[Batch] => Edinburgh_9
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2018-04-26
[FastqID] => 135
[wgsID] => 83
[fwdFile] => BE_29160_R1.fastq.gz
[fwdMd5] => 44082900337f6c6eb805dd5462b7b01b
[revFile] => BE_29160_R2.fastq.gz
[revMd5] => 48ad93902c005da1bc2e12e6793b513c
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10648178
[enaRun] => ERR11223849
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 60
[wgsID] => 83
[refGenome] => cf4
[dateSubmitted] => 2022-10-10 20:51:00
[dateCompleted] => 2022-10-11 14:36:00
[bamMd5] => 80429b728c4fc189f1d3bf01a203b1dc
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1003153419
[primaryReads] =>
[mappedReads] => 999611566
[primaryMapped] =>
[pairedReads] => 980180664
[meanInsertSize] => 481.83
[meanReadDepth] => 43.57
[variantsCalled] => 6412135
[variantsFiltered] => 6014957
[snpCount] => 4183663
[snpHom] => 1962095
[snpHet] => 2221568
[indelCount] => 1842780
[insHom] => 306974
[delHom] => 429191
[insHet] => 517539
[delHet] => 628765
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21775554
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775554/BE_29160-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242