Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190090
                    [wgsExptID] => 18
                    [Batch] => Edinburgh_8
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2017-12-12
                    [FastqID] => 136
                    [wgsID] => 302
                    [fwdFile] => BE_34005_R1.fastq.gz
                    [fwdMd5] => 3239429d8f68e6bc3e7fe5a2e8a60c2e
                    [revFile] => BE_34005_R2.fastq.gz
                    [revMd5] => c80e29c2ad5a1d7fd8f967c19152c0db
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10664699
                    [enaRun] => ERR11256490
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 428
                    [wgsID] => 302
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-12-22 10:15:00
                    [dateCompleted] => 2022-12-23 03:37:00
                    [bamMd5] => 5e7448af8c2be7e1e637759e40b7a610
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 949217189
                    [primaryReads] => 
                    [mappedReads] => 944477015
                    [primaryMapped] => 
                    [pairedReads] => 924374662
                    [meanInsertSize] => 525.31
                    [meanReadDepth] => 49.73
                    [variantsCalled] => 6550741
                    [variantsFiltered] => 6142226
                    [snpCount] => 4287962
                    [snpHom] => 1860033
                    [snpHet] => 2427929
                    [indelCount] => 1866150
                    [insHom] => 291400
                    [delHom] => 406104
                    [insHet] => 545503
                    [delHet] => 665538
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21778095
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778095/BE_34005-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242