Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099825
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 836
                    [wgsID] => 519
                    [fwdFile] => BE_39028_R1.fastq.gz
                    [fwdMd5] => de1e031b0c77b3f4f66cfa500361c1d8
                    [revFile] => BE_39028_R2.fastq.gz
                    [revMd5] => 5806209a11b6eac17f6c0588538a03ff
                    [rawReads] => 1225325744
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611255
                    [enaRun] => ERR14209035
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1706
                    [wgsID] => 519
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-24 09:45:14
                    [dateCompleted] => 2024-12-25 06:10:05
                    [bamMd5] => 11ca038a67a963a95110d8435b73e9d1
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 796495250
                    [primaryReads] => 787648971
                    [mappedReads] => 795183369
                    [primaryMapped] => 786337090
                    [pairedReads] => 772279492
                    [meanInsertSize] => 361.91
                    [meanReadDepth] => 32.05
                    [variantsCalled] => 6200801
                    [variantsFiltered] => 5918104
                    [snpCount] => 4175218
                    [snpHom] => 1956696
                    [snpHet] => 2218522
                    [indelCount] => 1752016
                    [insHom] => 353083
                    [delHom] => 477023
                    [insHet] => 431524
                    [delHet] => 525402
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759315
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759315/BE_39028-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242