Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099826
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 837
                    [wgsID] => 520
                    [fwdFile] => BE_39071_R1.fastq.gz
                    [fwdMd5] => 953c7ed49eb811ae62fa58f20f69ed80
                    [revFile] => BE_39071_R2.fastq.gz
                    [revMd5] => f05d701d26173f5c1a413413395f505f
                    [rawReads] => 908976808
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611256
                    [enaRun] => ERR14209036
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1704
                    [wgsID] => 520
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-24 09:41:22
                    [dateCompleted] => 2024-12-24 13:45:36
                    [bamMd5] => 8aa7c64312257a65cff467aa683bdd88
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 741610458
                    [primaryReads] => 733302792
                    [mappedReads] => 740783418
                    [primaryMapped] => 732475752
                    [pairedReads] => 722037032
                    [meanInsertSize] => 342.01
                    [meanReadDepth] => 29.10
                    [variantsCalled] => 6043171
                    [variantsFiltered] => 5779681
                    [snpCount] => 4083995
                    [snpHom] => 2033431
                    [snpHet] => 2050564
                    [indelCount] => 1703937
                    [insHom] => 370683
                    [delHom] => 497659
                    [insHet] => 388891
                    [delHet] => 477235
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759314
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759314/BE_39071-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242