Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099826
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 837
[wgsID] => 520
[fwdFile] => BE_39071_R1.fastq.gz
[fwdMd5] => 953c7ed49eb811ae62fa58f20f69ed80
[revFile] => BE_39071_R2.fastq.gz
[revMd5] => f05d701d26173f5c1a413413395f505f
[rawReads] => 908976808
[FastqRCS] => 1
[enaExperiment] => ERX13611256
[enaRun] => ERR14209036
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1704
[wgsID] => 520
[refGenome] => cf4
[dateSubmitted] => 2024-12-24 09:41:22
[dateCompleted] => 2024-12-24 13:45:36
[bamMd5] => 8aa7c64312257a65cff467aa683bdd88
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 741610458
[primaryReads] => 733302792
[mappedReads] => 740783418
[primaryMapped] => 732475752
[pairedReads] => 722037032
[meanInsertSize] => 342.01
[meanReadDepth] => 29.10
[variantsCalled] => 6043171
[variantsFiltered] => 5779681
[snpCount] => 4083995
[snpHom] => 2033431
[snpHet] => 2050564
[indelCount] => 1703937
[insHom] => 370683
[delHom] => 497659
[insHet] => 388891
[delHet] => 477235
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ25759314
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759314/BE_39071-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242