Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099827
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 838
[wgsID] => 521
[fwdFile] => BE_39075_R1.fastq.gz
[fwdMd5] => 1b163ed96c369bfd0eb8c29b1b0c4960
[revFile] => BE_39075_R2.fastq.gz
[revMd5] => 7203a7aff7b740a9cf8b4442b6fc4202
[rawReads] => 1048277020
[FastqRCS] => 1
[enaExperiment] => ERX13611257
[enaRun] => ERR14209037
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1707
[wgsID] => 521
[refGenome] => cf4
[dateSubmitted] => 2024-12-24 09:45:49
[dateCompleted] => 2024-12-25 10:27:50
[bamMd5] => bd36bc24939482a61ea72fbee382d22c
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 800263615
[primaryReads] => 790184773
[mappedReads] => 798988413
[primaryMapped] => 788909571
[pairedReads] => 775287578
[meanInsertSize] => 343.85
[meanReadDepth] => 32.06
[variantsCalled] => 6470105
[variantsFiltered] => 6181563
[snpCount] => 4374516
[snpHom] => 1730768
[snpHet] => 2643748
[indelCount] => 1817544
[insHom] => 308674
[delHom] => 424382
[insHet] => 507210
[delHet] => 618285
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ25759313
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759313/BE_39075-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242