Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099834
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 845
                    [wgsID] => 528
                    [fwdFile] => BE_41382_R1.fastq.gz
                    [fwdMd5] => 480f1df00095bf6c036861756ea7a1c1
                    [revFile] => BE_41382_R2.fastq.gz
                    [revMd5] => 8313744584ca025869183cf481665cb0
                    [rawReads] => 1036008394
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611261
                    [enaRun] => ERR14209041
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1746
                    [wgsID] => 528
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-10 13:42:05
                    [dateCompleted] => 2025-01-11 09:50:18
                    [bamMd5] => c21003bc67eb775f7713afe92708b26f
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 766825032
                    [primaryReads] => 757320131
                    [mappedReads] => 765520598
                    [primaryMapped] => 756015697
                    [pairedReads] => 743103322
                    [meanInsertSize] => 343.08
                    [meanReadDepth] => 30.18
                    [variantsCalled] => 6182492
                    [variantsFiltered] => 5912963
                    [snpCount] => 4180605
                    [snpHom] => 1941332
                    [snpHet] => 2239273
                    [indelCount] => 1741214
                    [insHom] => 348366
                    [delHom] => 472548
                    [insHet] => 430222
                    [delHet] => 524079
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759329
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759329/BE_41382-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242