Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099834
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 845
[wgsID] => 528
[fwdFile] => BE_41382_R1.fastq.gz
[fwdMd5] => 480f1df00095bf6c036861756ea7a1c1
[revFile] => BE_41382_R2.fastq.gz
[revMd5] => 8313744584ca025869183cf481665cb0
[rawReads] => 1036008394
[FastqRCS] => 1
[enaExperiment] => ERX13611261
[enaRun] => ERR14209041
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1746
[wgsID] => 528
[refGenome] => cf4
[dateSubmitted] => 2025-01-10 13:42:05
[dateCompleted] => 2025-01-11 09:50:18
[bamMd5] => c21003bc67eb775f7713afe92708b26f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 766825032
[primaryReads] => 757320131
[mappedReads] => 765520598
[primaryMapped] => 756015697
[pairedReads] => 743103322
[meanInsertSize] => 343.08
[meanReadDepth] => 30.18
[variantsCalled] => 6182492
[variantsFiltered] => 5912963
[snpCount] => 4180605
[snpHom] => 1941332
[snpHet] => 2239273
[indelCount] => 1741214
[insHom] => 348366
[delHom] => 472548
[insHet] => 430222
[delHet] => 524079
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ25759329
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759329/BE_41382-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242