Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099845
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 856
                    [wgsID] => 539
                    [fwdFile] => BE_41483_R1.fastq.gz
                    [fwdMd5] => fce0102d098c6b7c95db381ca50aeb9f
                    [revFile] => BE_41483_R2.fastq.gz
                    [revMd5] => c8720adfb9e5e1d07e7706211d0eee9d
                    [rawReads] => 1022274498
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611262
                    [enaRun] => ERR14209042
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1747
                    [wgsID] => 539
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-10 13:42:34
                    [dateCompleted] => 2025-01-11 10:18:20
                    [bamMd5] => 2b4c93932ff6adab24224cbdcf8a1b28
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 864394124
                    [primaryReads] => 857063903
                    [mappedReads] => 863382098
                    [primaryMapped] => 856051877
                    [pairedReads] => 841809962
                    [meanInsertSize] => 392.23
                    [meanReadDepth] => 33.98
                    [variantsCalled] => 6555644
                    [variantsFiltered] => 6261510
                    [snpCount] => 4435653
                    [snpHom] => 1683998
                    [snpHet] => 2751655
                    [indelCount] => 1836923
                    [insHom] => 296366
                    [delHom] => 409336
                    [insHet] => 529256
                    [delHet] => 644678
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759330
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759330/BE_41483-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242