Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099846
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 857
                    [wgsID] => 540
                    [fwdFile] => BE_41484_R1.fastq.gz
                    [fwdMd5] => a13d468e325c8100929339fac582cc84
                    [revFile] => BE_41484_R2.fastq.gz
                    [revMd5] => a8514158cbe81a86d19420eff617b433
                    [rawReads] => 996305382
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611263
                    [enaRun] => ERR14209043
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1748
                    [wgsID] => 540
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-10 13:42:59
                    [dateCompleted] => 2025-01-11 08:24:06
                    [bamMd5] => b27f940dbf59502a09ec7a20bc12fcdc
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 770452551
                    [primaryReads] => 763280933
                    [mappedReads] => 769621597
                    [primaryMapped] => 762449979
                    [pairedReads] => 750414470
                    [meanInsertSize] => 378.28
                    [meanReadDepth] => 31.73
                    [variantsCalled] => 6663009
                    [variantsFiltered] => 6370551
                    [snpCount] => 4518065
                    [snpHom] => 1501639
                    [snpHet] => 3016426
                    [indelCount] => 1864322
                    [insHom] => 262219
                    [delHom] => 368754
                    [insHet] => 575775
                    [delHet] => 703806
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759323
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759323/BE_41484-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242