Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190156
                    [wgsExptID] => 14
                    [Batch] => Edinburgh_4
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 13
                    [DateSubmitted] => 
                    [FastqID] => 138
                    [wgsID] => 234
                    [fwdFile] => BEC_32569_R1.fastq.gz
                    [fwdMd5] => ebfd23a877fcbd4330bea2f7e59f5fd8
                    [revFile] => BEC_32569_R2.fastq.gz
                    [revMd5] => 3dd82c3f89c6c865c4784c70ea7f74b7
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679337
                    [enaRun] => ERR11271767
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 254
                    [wgsID] => 234
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-09 10:44:00
                    [dateCompleted] => 2022-11-10 04:58:00
                    [bamMd5] => f00df2f74f748266121fcec5dedb3c12
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 979706413
                    [primaryReads] => 
                    [mappedReads] => 976825923
                    [primaryMapped] => 
                    [pairedReads] => 957820542
                    [meanInsertSize] => 479.26
                    [meanReadDepth] => 36.31
                    [variantsCalled] => 6353929
                    [variantsFiltered] => 6006195
                    [snpCount] => 4208313
                    [snpHom] => 1862939
                    [snpHet] => 2345374
                    [indelCount] => 1808526
                    [insHom] => 304899
                    [delHom] => 420892
                    [insHet] => 506382
                    [delHet] => 615009
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21517640
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517640/BEC_32569-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242