Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190091
                    [wgsExptID] => 18
                    [Batch] => Edinburgh_8
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2017-12-12
                    [FastqID] => 139
                    [wgsID] => 300
                    [fwdFile] => BGV_G_27325_R1.fastq.gz
                    [fwdMd5] => b23c56252d90057508040ac303f62211
                    [revFile] => BGV_G_27325_R2.fastq.gz
                    [revMd5] => 2d173a6821e153fe6245e5e7fd43d968
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10664697
                    [enaRun] => ERR11256488
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 426
                    [wgsID] => 300
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-02 14:38:00
                    [dateCompleted] => 2023-02-03 08:25:00
                    [bamMd5] => 13764ff39b94e9e659a87695a24292f3
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 755703712
                    [primaryReads] => 
                    [mappedReads] => 751618643
                    [primaryMapped] => 
                    [pairedReads] => 734295872
                    [meanInsertSize] => 491.00
                    [meanReadDepth] => 38.55
                    [variantsCalled] => 6353755
                    [variantsFiltered] => 5989891
                    [snpCount] => 4188388
                    [snpHom] => 1925479
                    [snpHet] => 2262909
                    [indelCount] => 1811883
                    [insHom] => 306682
                    [delHom] => 427102
                    [insHet] => 501189
                    [delHet] => 614354
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21778096
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778096/BGV_G_27325-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242