Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189955
                    [wgsExptID] => 2
                    [Batch] => Oxford_1
                    [SeqLaboratory] => Wellcome Trust Centre for Human Genetics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq 1000
                    [ReadType] => 
                    [LibraryPrep] => Fragmentase, NEBnext ultra, 4x amp
                    [PcrFree] => N
                    [SampleCount] => 1
                    [DateSubmitted] => 
                    [FastqID] => 449
                    [wgsID] => 87
                    [fwdFile] => BGVP_17289_R1.fastq.gz
                    [fwdMd5] => d541e502f055365624c8d9a5cb397db9
                    [revFile] => BGVP_17289_R2.fastq.gz
                    [revMd5] => bd39c01d4e2256efb8821d3816479ace
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10158676
                    [enaRun] => ERR10691969
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 270
                    [wgsID] => 87
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-06 09:47:00
                    [dateCompleted] => 2023-02-06 22:18:00
                    [bamMd5] => 8b7231f47864f81c658f57429ab08d45
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 721849971
                    [primaryReads] => 
                    [mappedReads] => 719160795
                    [primaryMapped] => 
                    [pairedReads] => 646400324
                    [meanInsertSize] => 197.75
                    [meanReadDepth] => 23.24
                    [variantsCalled] => 5653988
                    [variantsFiltered] => 5388836
                    [snpCount] => 3962804
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1431415
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21790188
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790188/BGV_P_17289-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242