Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN04196856
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 484
[wgsID] => 312
[fwdFile] => SRX4036165_SRR7107928_1.fastq.gz
[fwdMd5] => aa851a24a860d2dfc96e9ecafd5c48cd
[revFile] => SRX4036165_SRR7107928_2.fastq.gz
[revMd5] => 00e21a097e94ea77d448250d2040c763
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => SRX4036165
[enaRun] => SRR7107928
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 223
[wgsID] => 312
[refGenome] => cf4
[dateSubmitted] => 2022-10-18 15:34:00
[dateCompleted] => 2022-10-19 07:38:00
[bamMd5] => 54c32f5d5c4a25e15ec142beafa98c4c
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 758413793
[primaryReads] =>
[mappedReads] => 734752558
[primaryMapped] =>
[pairedReads] => 717149532
[meanInsertSize] => 452.26
[meanReadDepth] => 27.02
[variantsCalled] => 5837010
[variantsFiltered] => 5525268
[snpCount] => 3962137
[snpHom] =>
[snpHet] =>
[indelCount] => 1570515
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242