Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA111329082
[wgsExptID] => 24
[Batch] => CRUKCI_2
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => In house, Illumina DNA PCR-Free Prep, Tagmentation
[PcrFree] => Y
[SampleCount] => 2
[DateSubmitted] => 2022-02-03
[FastqID] => 648
[wgsID] => 34
[fwdFile] => BoT_37873_R1.fastq.gz
[fwdMd5] => 41028f25ba57a04e3c05e66b6c171fe4
[revFile] => BoT_37873_R2.fastq.gz
[revMd5] => f3cf7fbcb090d54447515aad2a3ae0bc
[rawReads] => 991743372
[FastqRCS] => 1
[enaExperiment] => ERX10830393
[enaRun] => ERR11423085
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 47
[wgsID] => 34
[refGenome] => cf4
[dateSubmitted] => 2023-07-06 10:27:00
[dateCompleted] => 2023-07-07 09:52:00
[bamMd5] => d6e521138d67da7aaee054f843ba902f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 811159261
[primaryReads] =>
[mappedReads] => 806642419
[primaryMapped] =>
[pairedReads] => 786847432
[meanInsertSize] => 515.88
[meanReadDepth] => 38.69
[variantsCalled] => 6281252
[variantsFiltered] => 5950424
[snpCount] => 4148017
[snpHom] => 1936739
[snpHet] => 2211278
[indelCount] => 1812596
[insHom] => 353567
[delHom] => 475830
[insHet] => 469132
[delHet] => 556437
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21659508
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659508/BoT_37873-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242