Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190211
                    [wgsExptID] => 12
                    [Batch] => Edinburgh_2
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 36
                    [DateSubmitted] => 
                    [FastqID] => 147
                    [wgsID] => 144
                    [fwdFile] => BP_28016_R1.fastq.gz
                    [fwdMd5] => 8aa773f91fedc9cc91a32d293cdb69c7
                    [revFile] => BP_28016_R2.fastq.gz
                    [revMd5] => 540a0176502dbf1eb32ac4c36c92739d
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10686607
                    [enaRun] => ERR11278907
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 235
                    [wgsID] => 144
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-07 11:29:00
                    [dateCompleted] => 2022-11-08 04:59:00
                    [bamMd5] => 0d3f99fa0e1a08496908581fd66e4ccc
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1016503145
                    [primaryReads] => 
                    [mappedReads] => 840629673
                    [primaryMapped] => 
                    [pairedReads] => 824046890
                    [meanInsertSize] => 422.83
                    [meanReadDepth] => 37.71
                    [variantsCalled] => 5584921
                    [variantsFiltered] => 5232124
                    [snpCount] => 3604320
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1636087
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21782991
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782991/BP_28016-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242