Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190233
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 148
                    [wgsID] => 204
                    [fwdFile] => BR_32256_R1.fastq.gz
                    [fwdMd5] => 61bb01efdd5110741de70e3061f04481
                    [revFile] => BR_32256_R2.fastq.gz
                    [revMd5] => 8f072e9542bd84f888a68ba7f220e1ae
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10682124
                    [enaRun] => ERR11274554
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 244
                    [wgsID] => 204
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-08 12:39:00
                    [dateCompleted] => 2022-11-09 06:27:00
                    [bamMd5] => 587bb7a56744ca6b2d4f9211d0441feb
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 973564419
                    [primaryReads] => 
                    [mappedReads] => 935031777
                    [primaryMapped] => 
                    [pairedReads] => 917070570
                    [meanInsertSize] => 445.79
                    [meanReadDepth] => 45.48
                    [variantsCalled] => 6024711
                    [variantsFiltered] => 5672900
                    [snpCount] => 3946001
                    [snpHom] => 2030767
                    [snpHet] => 1915234
                    [indelCount] => 1736252
                    [insHom] => 325018
                    [delHom] => 454576
                    [insHet] => 445842
                    [delHet] => 543524
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375570
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375570/BR_32256-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242