Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190234
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 149
                    [wgsID] => 205
                    [fwdFile] => BR_32257_R1.fastq.gz
                    [fwdMd5] => 23e52707f229cd7f75b57db0ad505f89
                    [revFile] => BR_32257_R2.fastq.gz
                    [revMd5] => 3d6d21f6241f96f3146bad2be9958896
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10682125
                    [enaRun] => ERR11274555
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 245
                    [wgsID] => 205
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-08 12:40:00
                    [dateCompleted] => 2022-11-09 06:47:00
                    [bamMd5] => 033e6e7908e333680e487646fba4ab7d
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 953082561
                    [primaryReads] => 
                    [mappedReads] => 881719626
                    [primaryMapped] => 
                    [pairedReads] => 864079038
                    [meanInsertSize] => 456.94
                    [meanReadDepth] => 40.83
                    [variantsCalled] => 6304499
                    [variantsFiltered] => 5969828
                    [snpCount] => 4151055
                    [snpHom] => 1834704
                    [snpHet] => 2316351
                    [indelCount] => 1829293
                    [insHom] => 286631
                    [delHom] => 404789
                    [insHet] => 524437
                    [delHet] => 652234
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375571
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375571/BR_32257-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242