Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190234
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 149
[wgsID] => 205
[fwdFile] => BR_32257_R1.fastq.gz
[fwdMd5] => 23e52707f229cd7f75b57db0ad505f89
[revFile] => BR_32257_R2.fastq.gz
[revMd5] => 3d6d21f6241f96f3146bad2be9958896
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10682125
[enaRun] => ERR11274555
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 245
[wgsID] => 205
[refGenome] => cf4
[dateSubmitted] => 2022-11-08 12:40:00
[dateCompleted] => 2022-11-09 06:47:00
[bamMd5] => 033e6e7908e333680e487646fba4ab7d
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 953082561
[primaryReads] =>
[mappedReads] => 881719626
[primaryMapped] =>
[pairedReads] => 864079038
[meanInsertSize] => 456.94
[meanReadDepth] => 40.83
[variantsCalled] => 6304499
[variantsFiltered] => 5969828
[snpCount] => 4151055
[snpHom] => 1834704
[snpHet] => 2316351
[indelCount] => 1829293
[insHom] => 286631
[delHom] => 404789
[insHet] => 524437
[delHet] => 652234
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21375571
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375571/BR_32257-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242