Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190170
[wgsExptID] => 16
[Batch] => Edinburgh_6
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 9
[DateSubmitted] =>
[FastqID] => 153
[wgsID] => 254
[fwdFile] => CeT_33637_R1.fastq.gz
[fwdMd5] => d213791c70106a7096a6c0641440f239
[revFile] => CeT_33637_R2.fastq.gz
[revMd5] => b44d29e033bdc81da9f8bcd319226b5f
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10677695
[enaRun] => ERR11270107
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 261
[wgsID] => 254
[refGenome] => cf4
[dateSubmitted] => 2022-11-19 11:15:00
[dateCompleted] => 2022-11-20 07:48:00
[bamMd5] => 8f4af15c0dacfb3609aad425951f9cd8
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 955134842
[primaryReads] =>
[mappedReads] => 951040987
[primaryMapped] =>
[pairedReads] => 932619586
[meanInsertSize] => 482.15
[meanReadDepth] => 42.58
[variantsCalled] => 5809061
[variantsFiltered] => 5480359
[snpCount] => 3817864
[snpHom] => 2240230
[snpHet] => 1577634
[indelCount] => 1670230
[insHom] => 374752
[delHom] => 505618
[insHet] => 369433
[delHet] => 447371
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21782174
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782174/CeT_33637-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242