Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190170
                    [wgsExptID] => 16
                    [Batch] => Edinburgh_6
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 9
                    [DateSubmitted] => 
                    [FastqID] => 153
                    [wgsID] => 254
                    [fwdFile] => CeT_33637_R1.fastq.gz
                    [fwdMd5] => d213791c70106a7096a6c0641440f239
                    [revFile] => CeT_33637_R2.fastq.gz
                    [revMd5] => b44d29e033bdc81da9f8bcd319226b5f
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10677695
                    [enaRun] => ERR11270107
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 261
                    [wgsID] => 254
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-19 11:15:00
                    [dateCompleted] => 2022-11-20 07:48:00
                    [bamMd5] => 8f4af15c0dacfb3609aad425951f9cd8
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 955134842
                    [primaryReads] => 
                    [mappedReads] => 951040987
                    [primaryMapped] => 
                    [pairedReads] => 932619586
                    [meanInsertSize] => 482.15
                    [meanReadDepth] => 42.58
                    [variantsCalled] => 5809061
                    [variantsFiltered] => 5480359
                    [snpCount] => 3817864
                    [snpHom] => 2240230
                    [snpHet] => 1577634
                    [indelCount] => 1670230
                    [insHom] => 374752
                    [delHom] => 505618
                    [insHet] => 369433
                    [delHet] => 447371
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21782174
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782174/CeT_33637-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242