Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190235
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 154
                    [wgsID] => 201
                    [fwdFile] => CH_32170_R1.fastq.gz
                    [fwdMd5] => 5f33bc68853f86dcc1e4aaee50ba9f4e
                    [revFile] => CH_32170_R2.fastq.gz
                    [revMd5] => 028df416a9085627342379445a55d3cd
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10682121
                    [enaRun] => ERR11274551
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 246
                    [wgsID] => 201
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-19 11:13:00
                    [dateCompleted] => 2022-11-20 08:14:00
                    [bamMd5] => 261faac1baead58c3aad1a5970997dfb
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 997881759
                    [primaryReads] => 
                    [mappedReads] => 908053652
                    [primaryMapped] => 
                    [pairedReads] => 888653876
                    [meanInsertSize] => 448.69
                    [meanReadDepth] => 44.98
                    [variantsCalled] => 7350110
                    [variantsFiltered] => 6913130
                    [snpCount] => 4902759
                    [snpHom] => 2500216
                    [snpHet] => 2402543
                    [indelCount] => 2023547
                    [insHom] => 379825
                    [delHom] => 506918
                    [insHet] => 541631
                    [delHet] => 635881
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375567
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375567/CH_32170-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242